Detailed information of SNP:



SNP ID: sf0130622839(Gbrowse)

Chromosome: chr01

Position: 30622839
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1419 82.66% 17.34%
All Indica799 69.71% 30.29%
All Japonica497 100.00% 0.00%
Aus67 95.52% 4.48%
Indica I375 47.20% 52.80%
Indica II213 99.06% 0.94%
Indica Intermediate211 80.09% 19.91%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 97.62% 2.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0130622839 C->T LOC_Os01g53294(LOC_Os01g53294.1) INTRON