Detailed information of SNP:
|
SNP ID:
sf0130643809(Gbrowse)
Chromosome: chr01 Position: 30643809 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1386 | 81.46% | 18.54% |
| All Indica | 798 | 99.62% | 0.38% |
| All Japonica | 468 | 47.65% | 52.35% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 316 | 37.66% | 62.34% |
| Tropical Japonica | 86 | 75.58% | 24.42% |
| Japonica Intermediate | 66 | 59.09% | 40.91% |
| Group VI/Aromatic | 11 | 90.91% | 9.09% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0130643809 | G->A | INTERGENIC | None |