Detailed information of SNP:
|
SNP ID:
sf0130650738(Gbrowse)
Chromosome: chr01 Position: 30650738 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 96.65% | 3.35% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 482 | 93.98% | 6.02% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 324 | 93.52% | 6.48% |
| Tropical Japonica | 91 | 97.80% | 2.20% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0130650738 | C->T | INTERGENIC | None |