Detailed information of SNP:
|
SNP ID:
sf0130653989(Gbrowse)
Chromosome: chr01 Position: 30653989 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1373 | 50.55% | 49.45% |
| All Indica | 797 | 24.97% | 75.03% |
| All Japonica | 455 | 99.34% | 0.66% |
| Aus | 67 | 8.96% | 91.04% |
| Indica I | 373 | 46.38% | 53.62% |
| Indica II | 213 | 0.94% | 99.06% |
| Indica Intermediate | 211 | 11.37% | 88.63% |
| Temperate Japonica | 313 | 99.68% | 0.32% |
| Tropical Japonica | 92 | 97.83% | 2.17% |
| Japonica Intermediate | 50 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0130653989 | A->G | INTERGENIC | None |