Detailed information of SNP:
|
SNP ID:
sf0130660624(Gbrowse)
Chromosome: chr01 Position: 30660624 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1330 | 80.68% | 19.32% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 413 | 40.68% | 59.32% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 286 | 37.76% | 62.24% |
| Tropical Japonica | 68 | 39.71% | 60.29% |
| Japonica Intermediate | 59 | 55.93% | 44.07% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 38 | 76.32% | 23.68% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0130660624 | T->C | INTERGENIC | None |