Detailed information of SNP:
|
SNP ID:
sf0130661198(Gbrowse)
Chromosome: chr01 Position: 30661198 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1377 | 87.22% | 12.78% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 456 | 62.94% | 37.06% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 311 | 55.63% | 44.37% |
| Tropical Japonica | 83 | 86.75% | 13.25% |
| Japonica Intermediate | 62 | 67.74% | 32.26% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0130661198 | T->C | INTERGENIC | None |