Detailed information of SNP:
|
SNP ID:
sf0130666332(Gbrowse)
Chromosome: chr01 Position: 30666332 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1346 | 87.74% | 12.26% |
| All Indica | 798 | 99.50% | 0.50% |
| All Japonica | 431 | 63.81% | 36.19% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 297 | 55.56% | 44.44% |
| Tropical Japonica | 74 | 94.59% | 5.41% |
| Japonica Intermediate | 60 | 66.67% | 33.33% |
| Group VI/Aromatic | 11 | 100.00% | 0.00% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0130666332 | G->C | LOC_Os01g53370(LOC_Os01g53370.1) | Non-Synonymous SNP |