Detailed information of SNP:
|
SNP ID:
sf0130669939(Gbrowse)
Chromosome: chr01 Position: 30669939 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1376 | 87.35% | 12.65% |
| All Indica | 798 | 99.25% | 0.75% |
| All Japonica | 457 | 64.33% | 35.67% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 312 | 56.09% | 43.91% |
| Tropical Japonica | 83 | 92.77% | 7.23% |
| Japonica Intermediate | 62 | 67.74% | 32.26% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 87.50% | 12.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0130669939 | T->A | INTERGENIC | None |