Detailed information of SNP:
|
SNP ID:
sf0130683854(Gbrowse)
Chromosome: chr01 Position: 30683854 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1334 | 95.13% | 4.87% |
| All Indica | 715 | 91.33% | 8.67% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 342 | 92.98% | 7.02% |
| Indica II | 183 | 84.15% | 15.85% |
| Indica Intermediate | 190 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0130683854 | C->A | INTERGENIC | None |