Detailed information of SNP:
|
SNP ID:
sf0130696604(Gbrowse)
Chromosome: chr01 Position: 30696604 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1303 | 90.10% | 9.90% |
| All Indica | 798 | 99.37% | 0.63% |
| All Japonica | 387 | 68.99% | 31.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 252 | 60.32% | 39.68% |
| Tropical Japonica | 77 | 97.40% | 2.60% |
| Japonica Intermediate | 58 | 68.97% | 31.03% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 89.19% | 10.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0130696604 | T->C | INTERGENIC | None |