Detailed information of SNP:
|
SNP ID:
sf0130707493(Gbrowse)
Chromosome: chr01 Position: 30707493 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1400 | 66.00% | 34.00% |
| All Indica | 797 | 99.12% | 0.88% |
| All Japonica | 481 | 10.40% | 89.60% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 326 | 7.36% | 92.64% |
| Tropical Japonica | 90 | 3.33% | 96.67% |
| Japonica Intermediate | 65 | 35.38% | 64.62% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0130707493 | C->T | LOC_Os01g53440(LOC_Os01g53440.1) | Synonymous |