Detailed information of SNP:
|
SNP ID:
sf0130713379(Gbrowse)
Chromosome: chr01 Position: 30713379 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 55.75% | 44.25% |
| All Indica | 798 | 95.61% | 4.39% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 92.80% | 7.20% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 39.02% | 60.98% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0130713379 | G->A | LOC_Os01g53450(LOC_Os01g53450.2) | INTRON |
| sf0130713379 | G->A | LOC_Os01g53450(LOC_Os01g53450.1) | INTRON |