Detailed information of SNP:
|
SNP ID:
sf0130730996(Gbrowse)
Chromosome: chr01 Position: 30730996 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1376 | 84.59% | 15.41% |
| All Indica | 797 | 94.10% | 5.90% |
| All Japonica | 459 | 64.71% | 35.29% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 96.27% | 3.73% |
| Indica II | 211 | 98.10% | 1.90% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 314 | 57.32% | 42.68% |
| Tropical Japonica | 82 | 91.46% | 8.54% |
| Japonica Intermediate | 63 | 66.67% | 33.33% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0130730996 | A->T | INTERGENIC | None |