Detailed information of SNP:
|
SNP ID:
sf0130735132(Gbrowse)
Chromosome: chr01 Position: 30735132 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1375 | 87.93% | 12.07% |
| All Indica | 798 | 99.50% | 0.50% |
| All Japonica | 457 | 65.21% | 34.79% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 311 | 57.23% | 42.77% |
| Tropical Japonica | 82 | 93.90% | 6.10% |
| Japonica Intermediate | 64 | 67.19% | 32.81% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0130735132 | G->A | INTERGENIC | None |