Detailed information of SNP:
|
SNP ID:
sf0130735709(Gbrowse)
Chromosome: chr01 Position: 30735709 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 63.30% | 36.70% |
| All Indica | 799 | 95.99% | 4.01% |
| All Japonica | 496 | 9.88% | 90.12% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 334 | 7.19% | 92.81% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 32.35% | 67.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0130735709 | C->T | INTERGENIC | None |