Detailed information of SNP:
|
SNP ID:
sf0130749192(Gbrowse)
Chromosome: chr01 Position: 30749192 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1339 | 98.88% | 1.12% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 418 | 97.13% | 2.87% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 280 | 96.43% | 3.57% |
| Tropical Japonica | 78 | 98.72% | 1.28% |
| Japonica Intermediate | 60 | 98.33% | 1.67% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0130749192 | T->C | INTERGENIC | None |