Detailed information of SNP:
|
SNP ID:
sf0130760913(Gbrowse)
Chromosome: chr01 Position: 30760913 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 61.62% | 38.38% |
| All Indica | 780 | 93.21% | 6.79% |
| All Japonica | 497 | 10.46% | 89.54% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 366 | 91.53% | 8.47% |
| Indica II | 209 | 95.69% | 4.31% |
| Indica Intermediate | 205 | 93.66% | 6.34% |
| Temperate Japonica | 335 | 7.46% | 92.54% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 41.46% | 58.54% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0130760913 | A->G | INTERGENIC | None |