Detailed information of SNP:
|
SNP ID:
sf0130770482(Gbrowse)
Chromosome: chr01 Position: 30770482 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 76.70% | 23.30% |
| All Indica | 779 | 59.69% | 40.31% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 361 | 84.76% | 15.24% |
| Indica II | 213 | 11.74% | 88.26% |
| Indica Intermediate | 205 | 65.37% | 34.63% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0130770482 | C->T | LOC_Os01g53590(LOC_Os01g53590.1) | INTRON |