Detailed information of SNP:
|
SNP ID:
sf0130772211(Gbrowse)
Chromosome: chr01 Position: 30772211 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 66.05% | 33.95% |
| All Indica | 788 | 40.86% | 59.14% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 60.81% | 39.19% |
| Indica II | 213 | 7.51% | 92.49% |
| Indica Intermediate | 205 | 39.51% | 60.49% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0130772211 | C->A | INTERGENIC | None |