Detailed information of SNP:
|
SNP ID:
sf0130801231(Gbrowse)
Chromosome: chr01 Position: 30801231 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 82.46% | 17.54% |
| All Indica | 788 | 71.07% | 28.93% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 368 | 51.09% | 48.91% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 207 | 80.19% | 19.81% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0130801231 | G->A | INTERGENIC | None |