Detailed information of SNP:
|
SNP ID:
sf0130812613(Gbrowse)
Chromosome: chr01 Position: 30812613 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1405 | 74.73% | 25.27% |
| All Indica | 798 | 99.25% | 0.75% |
| All Japonica | 485 | 33.40% | 66.60% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 326 | 35.58% | 64.42% |
| Tropical Japonica | 92 | 42.39% | 57.61% |
| Japonica Intermediate | 67 | 10.45% | 89.55% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0130812613 | T->C | INTERGENIC | None |