Detailed information of SNP:
|
SNP ID:
sf0130813460(Gbrowse)
Chromosome: chr01 Position: 30813460 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 65.89% | 34.11% |
| All Indica | 799 | 94.74% | 5.26% |
| All Japonica | 497 | 19.11% | 80.89% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 27.16% | 72.84% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0130813460 | A->G | INTERGENIC | None |