Detailed information of SNP:
|
SNP ID:
sf0130824731(Gbrowse)
Chromosome: chr01 Position: 30824731 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1331 | 97.15% | 2.85% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 415 | 91.57% | 8.43% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 279 | 98.57% | 1.43% |
| Tropical Japonica | 83 | 63.86% | 36.14% |
| Japonica Intermediate | 53 | 98.11% | 1.89% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 94.44% | 5.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0130824731 | G->T | INTERGENIC | None |