Detailed information of SNP:
|
SNP ID:
sf0130825570(Gbrowse)
Chromosome: chr01 Position: 30825570 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1274 | 85.24% | 14.76% |
| All Indica | 797 | 99.37% | 0.63% |
| All Japonica | 362 | 54.70% | 45.30% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 233 | 55.79% | 44.21% |
| Tropical Japonica | 86 | 67.44% | 32.56% |
| Japonica Intermediate | 43 | 23.26% | 76.74% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 35 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0130825570 | C->T | INTERGENIC | None |