Detailed information of SNP:
|
SNP ID:
sf0130835077(Gbrowse)
Chromosome: chr01 Position: 30835077 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 78.23% | 21.77% |
| All Indica | 797 | 62.86% | 37.14% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 88.53% | 11.47% |
| Indica II | 212 | 9.43% | 90.57% |
| Indica Intermediate | 210 | 70.95% | 29.05% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0130835077 | A->C | LOC_Os01g53670(LOC_Os01g53670.4) | INTRON |
| sf0130835077 | A->C | LOC_Os01g53670(LOC_Os01g53670.2) | INTRON |
| sf0130835077 | A->C | LOC_Os01g53670(LOC_Os01g53670.1) | INTRON |
| sf0130835077 | A->C | LOC_Os01g53670(LOC_Os01g53670.3) | INTRON |