Detailed information of SNP:
|
SNP ID:
sf0130843178(Gbrowse)
Chromosome: chr01 Position: 30843178 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 53.81% | 46.19% |
| All Indica | 798 | 38.10% | 61.90% |
| All Japonica | 497 | 81.09% | 18.91% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 374 | 11.76% | 88.24% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 30.81% | 69.19% |
| Temperate Japonica | 335 | 72.54% | 27.46% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0130843178 | A->T | LOC_Os01g53680(LOC_Os01g53680.1) | INTRON |