Detailed information of SNP:
|
SNP ID:
sf0130844901(Gbrowse)
Chromosome: chr01 Position: 30844901 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 71.88% | 28.12% |
| All Indica | 798 | 98.75% | 1.25% |
| All Japonica | 493 | 30.02% | 69.98% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 335 | 29.85% | 70.15% |
| Tropical Japonica | 90 | 47.78% | 52.22% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0130844901 | T->A | INTERGENIC | None |