Detailed information of SNP:
|
SNP ID:
sf0130864843(Gbrowse)
Chromosome: chr01 Position: 30864843 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 78.08% | 21.92% |
| All Indica | 799 | 72.22% | 27.78% |
| All Japonica | 497 | 85.71% | 14.29% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 46.40% | 53.60% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 82.09% | 17.91% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 85.29% | 14.71% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0130864843 | A->G | INTERGENIC | None |