Detailed information of SNP:
|
SNP ID:
sf0130873666(Gbrowse)
Chromosome: chr01 Position: 30873666 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 62.64% | 37.36% |
| All Indica | 799 | 98.25% | 1.75% |
| All Japonica | 496 | 4.03% | 95.97% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 334 | 1.80% | 98.20% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 13 | 15.38% | 84.62% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0130873666 | T->C | INTERGENIC | None |