Detailed information of SNP:
|
SNP ID:
sf0130889091(Gbrowse)
Chromosome: chr01 Position: 30889091 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 65.61% | 34.39% |
| All Indica | 797 | 96.11% | 3.89% |
| All Japonica | 497 | 18.51% | 81.49% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 209 | 94.74% | 5.26% |
| Temperate Japonica | 335 | 25.97% | 74.03% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0130889091 | T->C | LOC_Os01g53740(LOC_Os01g53740.1) | INTRON |