Detailed information of SNP:
|
SNP ID:
sf0130904463(Gbrowse)
Chromosome: chr01 Position: 30904463 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 52.87% | 47.13% |
| All Indica | 797 | 73.02% | 26.98% |
| All Japonica | 496 | 19.96% | 80.04% |
| Aus | 66 | 71.21% | 28.79% |
| Indica I | 373 | 47.99% | 52.01% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 334 | 28.44% | 71.56% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 45.00% | 55.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0130904463 | A->G | INTERGENIC | None |