Detailed information of SNP:
|
SNP ID:
sf0130955461(Gbrowse)
Chromosome: chr01 Position: 30955461 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 55.15% | 44.85% |
| All Indica | 799 | 28.54% | 71.46% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 375 | 54.13% | 45.87% |
| Indica II | 213 | 0.94% | 99.06% |
| Indica Intermediate | 211 | 10.90% | 89.10% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0130955461 | G->C | INTERGENIC | None |