Detailed information of SNP:
|
SNP ID:
sf0130960384(Gbrowse)
Chromosome: chr01 Position: 30960384 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1382 | 97.54% | 2.46% |
| All Indica | 763 | 96.20% | 3.80% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 369 | 97.83% | 2.17% |
| Indica II | 191 | 94.24% | 5.76% |
| Indica Intermediate | 203 | 95.07% | 4.93% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0130960384 | A->G | INTERGENIC | None |