Detailed information of SNP:
|
SNP ID:
sf0130972309(Gbrowse)
Chromosome: chr01 Position: 30972309 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 88.58% | 11.42% |
| All Indica | 798 | 99.62% | 0.38% |
| All Japonica | 489 | 70.35% | 29.65% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 330 | 66.97% | 33.03% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 65 | 55.38% | 44.62% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0130972309 | A->C | INTERGENIC | None |