Detailed information of SNP:
|
SNP ID:
sf0130975820(Gbrowse)
Chromosome: chr01 Position: 30975820 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 89.73% | 10.27% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 491 | 72.30% | 27.70% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 333 | 67.87% | 32.13% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 64 | 60.94% | 39.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0130975820 | A->G | LOC_Os01g53880(LOC_Os01g53880.4) | Non-Synonymous SNP |
| sf0130975820 | A->G | LOC_Os01g53880(LOC_Os01g53880.5) | Non-Synonymous SNP |
| sf0130975820 | A->G | LOC_Os01g53880(LOC_Os01g53880.7) | Non-Synonymous SNP |
| sf0130975820 | A->G | LOC_Os01g53880(LOC_Os01g53880.2) | Non-Synonymous SNP |
| sf0130975820 | A->G | LOC_Os01g53880(LOC_Os01g53880.6) | Non-Synonymous SNP |
| sf0130975820 | A->G | LOC_Os01g53880(LOC_Os01g53880.3) | Non-Synonymous SNP |
| sf0130975820 | A->G | LOC_Os01g53880(LOC_Os01g53880.1) | Non-Synonymous SNP |