Detailed information of SNP:
|
SNP ID:
sf0131032342(Gbrowse)
Chromosome: chr01 Position: 31032342 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1187 | 81.55% | 18.45% |
| All Indica | 784 | 96.56% | 3.44% |
| All Japonica | 295 | 51.53% | 48.47% |
| Aus | 60 | 31.67% | 68.33% |
| Indica I | 369 | 98.37% | 1.63% |
| Indica II | 211 | 99.05% | 0.95% |
| Indica Intermediate | 204 | 90.69% | 9.31% |
| Temperate Japonica | 199 | 54.27% | 45.73% |
| Tropical Japonica | 55 | 21.82% | 78.18% |
| Japonica Intermediate | 41 | 78.05% | 21.95% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 34 | 76.47% | 23.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0131032342 | A->T | INTERGENIC | None |