Detailed information of SNP:
|
SNP ID:
sf0131036366(Gbrowse)
Chromosome: chr01 Position: 31036366 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1361 | 76.34% | 23.66% |
| All Indica | 745 | 63.22% | 36.78% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 63 | 33.33% | 66.67% |
| Indica I | 325 | 48.92% | 51.08% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 208 | 52.40% | 47.60% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0131036366 | T->C | INTERGENIC | None |