Detailed information of SNP:
|
SNP ID:
sf0131107756(Gbrowse)
Chromosome: chr01 Position: 31107756 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 87.67% | 12.33% |
| All Indica | 798 | 99.37% | 0.63% |
| All Japonica | 483 | 65.84% | 34.16% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 324 | 62.35% | 37.65% |
| Tropical Japonica | 92 | 92.39% | 7.61% |
| Japonica Intermediate | 67 | 46.27% | 53.73% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0131107756 | A->G | LOC_Os01g54090(LOC_Os01g54090.1) | Synonymous |