Detailed information of SNP:
|
SNP ID:
sf0131208646(Gbrowse)
Chromosome: chr01 Position: 31208646 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1392 | 91.45% | 8.55% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 473 | 76.11% | 23.89% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 317 | 67.82% | 32.18% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 63 | 85.71% | 14.29% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0131208646 | C->T | LOC_Os01g54240(LOC_Os01g54240.1) | INTRON |
| sf0131208646 | C->T | LOC_Os01g54240(LOC_Os01g54240.2) | INTRON |