Detailed information of SNP:
|
SNP ID:
sf0131281932(Gbrowse)
Chromosome: chr01 Position: 31281932 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1285 | 78.44% | 21.56% |
| All Indica | 668 | 59.58% | 40.42% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 315 | 76.83% | 23.17% |
| Indica II | 170 | 20.59% | 79.41% |
| Indica Intermediate | 183 | 66.12% | 33.88% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0131281932 | A->G | LOC_Os01g54360(LOC_Os01g54360.1) | INTRON |