Detailed information of SNP:
|
SNP ID:
sf0131360675(Gbrowse)
Chromosome: chr01 Position: 31360675 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1194 | 85.68% | 14.32% |
| All Indica | 796 | 99.62% | 0.38% |
| All Japonica | 292 | 48.29% | 51.71% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 187 | 33.69% | 66.31% |
| Tropical Japonica | 50 | 76.00% | 24.00% |
| Japonica Intermediate | 55 | 72.73% | 27.27% |
| Group VI/Aromatic | 7 | 14.29% | 85.71% |
| Intermediate | 33 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0131360675 | A->G | LOC_Os01g54520(LOC_Os01g54520.1) | UTR_3_PRIME |