Detailed information of SNP:
|
SNP ID:
sf0131389697(Gbrowse)
Chromosome: chr01 Position: 31389697 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 68.25% | 31.75% |
| All Indica | 799 | 45.18% | 54.82% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 62.93% | 37.07% |
| Indica II | 213 | 4.69% | 95.31% |
| Indica Intermediate | 211 | 54.50% | 45.50% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 76.92% | 23.08% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0131389697 | G->A | INTERGENIC | None |