Detailed information of SNP:



SNP ID: sf0131412027(Gbrowse)

Chromosome: chr01

Position: 31412027
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1418 74.89% 25.11%
All Indica798 58.27% 41.73%
All Japonica497 99.20% 0.80%
Aus67 82.09% 17.91%
Indica I375 38.40% 61.60%
Indica II213 93.43% 6.57%
Indica Intermediate210 58.10% 41.90%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 96.81% 3.19%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 83.33% 16.67%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0131412027 C->T INTERGENIC None