Detailed information of SNP:
|
SNP ID:
sf0131412027(Gbrowse)
Chromosome: chr01 Position: 31412027 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 74.89% | 25.11% |
| All Indica | 798 | 58.27% | 41.73% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 38.40% | 61.60% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 210 | 58.10% | 41.90% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0131412027 | C->T | INTERGENIC | None |