Detailed information of SNP:
|
SNP ID:
sf0131414373(Gbrowse)
Chromosome: chr01 Position: 31414373 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 70.40% | 29.60% |
| All Indica | 799 | 57.32% | 42.68% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 40.53% | 59.47% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 50.71% | 49.29% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0131414373 | C->A | INTERGENIC | None |