Detailed information of SNP:
|
SNP ID:
sf0131416037(Gbrowse)
Chromosome: chr01 Position: 31416037 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 60.54% | 39.46% |
| All Indica | 799 | 54.82% | 45.18% |
| All Japonica | 497 | 75.65% | 24.35% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 37.07% | 62.93% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 47.87% | 52.13% |
| Temperate Japonica | 335 | 77.01% | 22.99% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 48.53% | 51.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0131416037 | A->G | INTERGENIC | None |