Detailed information of SNP:
|
SNP ID:
sf0131428498(Gbrowse)
Chromosome: chr01 Position: 31428498 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 63.44% | 36.56% |
| All Indica | 797 | 94.48% | 5.52% |
| All Japonica | 497 | 12.88% | 87.12% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 374 | 96.26% | 3.74% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 210 | 93.81% | 6.19% |
| Temperate Japonica | 335 | 5.67% | 94.33% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 50.00% | 50.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0131428498 | T->G | INTERGENIC | None |