Detailed information of SNP:
|
SNP ID:
sf0131430300(Gbrowse)
Chromosome: chr01 Position: 31430300 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1405 | 89.18% | 10.82% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 483 | 70.19% | 29.81% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 323 | 60.99% | 39.01% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 67 | 76.12% | 23.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0131430300 | A->G | INTERGENIC | None |