Detailed information of SNP:
|
SNP ID:
sf0131434853(Gbrowse)
Chromosome: chr01 Position: 31434853 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 94.05% | 5.95% |
| All Indica | 793 | 89.53% | 10.47% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 374 | 95.72% | 4.28% |
| Indica II | 211 | 94.31% | 5.69% |
| Indica Intermediate | 208 | 73.56% | 26.44% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0131434853 | C->T | LOC_Os01g54640(LOC_Os01g54640.1) | INTRON |