Detailed information of SNP:
|
SNP ID:
sf0131460805(Gbrowse)
Chromosome: chr01 Position: 31460805 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1235 | 76.44% | 23.56% |
| All Indica | 633 | 55.77% | 44.23% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 55 | 94.55% | 5.45% |
| Indica I | 295 | 66.44% | 33.56% |
| Indica II | 158 | 34.18% | 65.82% |
| Indica Intermediate | 180 | 57.22% | 42.78% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 80.56% | 19.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0131460805 | A->G | INTERGENIC | None |