Detailed information of SNP:
|
SNP ID:
sf0131465614(Gbrowse)
Chromosome: chr01 Position: 31465614 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1240 | 80.48% | 19.52% |
| All Indica | 668 | 65.42% | 34.58% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 22 | 77.27% | 22.73% |
| Indica I | 291 | 76.63% | 23.37% |
| Indica II | 195 | 52.82% | 47.18% |
| Indica Intermediate | 182 | 60.99% | 39.01% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0131465614 | C->T | LOC_Os01g54690(LOC_Os01g54690.1) | Synonymous |